- Top 5 hits from Blast against SwissProt Protein DB
- Top 50 blastp hits for each CDS searched against the Swiss-Prot protein database
- CDS
- CDS features in BioHealthBase
- Gene
- Gene features in BioHealthBase
- Glimmer
- Gene predictions using Glimmer algorithm
- Protein secondary structure predictions using PSIPRED algorithm
- Protein secondary structure predictions using the method PSIPRED
- PSIPRED Scores
- Protein secondary structure predictions using the method PSIPRED
- Protein Domains/Motifs found using InterProScan algorithms
- Matched Pfam domains or predicted domains/motifs including signal peptide, transmembrane, coiled coil or low complexity region for each CDS
- Operon Prediction PTools
- The data were generated using Pathway Tools operon predictor from SRI International
- Operon Prediction WUSTL
- The data were generated using an operon predictor designed to work without extensive training data, relying on a small set of a priori assumptions about the properties of the genome being annotated. Bioinformatics Volume 21, Issue 7 April 2005
- DNA/GC Content
- Expressed as a percentage, it is the proportion of GC-base pairs in the DNA molecule
- 6-frame translation
- Translation of nucleic acids in six frames, three in forward direction and three in reverse direction
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$Id: 08.genbank.conf,v 1.3 2003/09/12 02:50:35 lstein Exp $
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